Finally got the time to get the car to the dealer and take them for a ride. Got the clunking and creaking within a few feet of pulling away from the service area. We also got a few other sounds that the rep could feel in the seat. Will see about how this is fixed but the rep did not seem like it was going to be an easy job, also thought this is going to take time to track down the noises if they ever can.
Also have had the oil over fill sensor alerting me on multiple occasions since I bought the car, turns out there is a technical service advisory about this.
Lemon law might come into play if they cannot address the noise for the second time, don't know how the law works in AZ on a used car that is almost 2 years old with 2.5k miles since it was noticed.